Coverage report: 100%

Files Functions Classes

coverage.py v7.11.3, created at 2026-03-24 05:23 +0000

File class statements missing excluded coverage
nexusLIMS/__init__.py (no class) 18 0 10 100%
nexusLIMS/__main__.py (no class) 3 0 0 100%
nexusLIMS/builder/__init__.py (no class) 0 0 0 100%
nexusLIMS/builder/preflight.py CheckResult 0 0 0 100%
nexusLIMS/builder/preflight.py PreflightError 3 0 0 100%
nexusLIMS/builder/preflight.py (no class) 240 0 0 100%
nexusLIMS/builder/record_builder.py RecordBuildResult 0 0 0 100%
nexusLIMS/builder/record_builder.py (no class) 250 0 19 100%
nexusLIMS/cli/__init__.py (no class) 26 0 2 100%
nexusLIMS/cli/config.py (no class) 151 0 1 100%
nexusLIMS/cli/main.py LazyGroup 15 0 0 100%
nexusLIMS/cli/main.py (no class) 68 0 3 100%
nexusLIMS/cli/manage_instruments.py (no class) 101 0 4 100%
nexusLIMS/cli/migrate.py (no class) 238 0 1 100%
nexusLIMS/cli/process_records.py (no class) 188 0 2 100%
nexusLIMS/config.py NemoHarvesterConfig 6 0 0 100%
nexusLIMS/config.py EmailConfig 0 0 0 100%
nexusLIMS/config.py Settings 62 0 1 100%
nexusLIMS/config.py _SettingsManager 15 0 0 100%
nexusLIMS/config.py _SettingsProxy 0 0 0 100%
nexusLIMS/config.py (no class) 93 0 19 100%
nexusLIMS/db/__init__.py (no class) 0 0 0 100%
nexusLIMS/db/engine.py (no class) 8 0 2 100%
nexusLIMS/db/enums.py EventType 0 0 0 100%
nexusLIMS/db/enums.py RecordStatus 0 0 0 100%
nexusLIMS/db/enums.py ExternalSystem 0 0 0 100%
nexusLIMS/db/enums.py (no class) 19 0 0 100%
nexusLIMS/db/migrations/__init__.py (no class) 0 0 0 100%
nexusLIMS/db/migrations/env.py (no class) 61 0 3 100%
nexusLIMS/db/migrations/utils.py (no class) 30 0 2 100%
nexusLIMS/db/migrations/versions/__init__.py (no class) 0 0 0 100%
nexusLIMS/db/migrations/versions/v1_4_3_initial_schema_baseline.py (no class) 15 0 0 100%
nexusLIMS/db/migrations/versions/v2_4_0a_add_upload_log_table.py (no class) 15 0 0 100%
nexusLIMS/db/migrations/versions/v2_4_0b_add_check_constraints.py (no class) 68 0 2 100%
nexusLIMS/db/migrations/versions/v2_5_0a_add_external_user_identifiers.py (no class) 15 0 0 100%
nexusLIMS/db/migrations/versions/v2_5_0b_remove_computer_fields.py (no class) 23 0 0 100%
nexusLIMS/db/models.py TZDateTime 10 0 0 100%
nexusLIMS/db/models.py Instrument 14 0 0 100%
nexusLIMS/db/models.py SessionLog 10 0 0 100%
nexusLIMS/db/models.py UploadLog 2 0 0 100%
nexusLIMS/db/models.py ExternalUserIdentifier 1 0 0 100%
nexusLIMS/db/models.py (no class) 104 0 4 100%
nexusLIMS/db/session_handler.py Session 20 0 0 100%
nexusLIMS/db/session_handler.py (no class) 39 0 0 100%
nexusLIMS/exporters/__init__.py (no class) 44 0 6 100%
nexusLIMS/exporters/base.py ExportResult 2 0 0 100%
nexusLIMS/exporters/base.py ExportContext 4 0 0 100%
nexusLIMS/exporters/base.py ExportDestination 0 0 3 100%
nexusLIMS/exporters/base.py (no class) 38 0 4 100%
nexusLIMS/exporters/destinations/__init__.py (no class) 0 0 0 100%
nexusLIMS/exporters/destinations/cdcs.py CDCSDestination 50 0 0 100%
nexusLIMS/exporters/destinations/cdcs.py (no class) 19 0 0 100%
nexusLIMS/exporters/destinations/elabftw.py ExtraFieldsGroup 0 0 0 100%
nexusLIMS/exporters/destinations/elabftw.py ExtraField 0 0 0 100%
nexusLIMS/exporters/destinations/elabftw.py ELabFTWConfig 0 0 0 100%
nexusLIMS/exporters/destinations/elabftw.py ExtraFieldsMetadata 0 0 0 100%
nexusLIMS/exporters/destinations/elabftw.py ELabFTWDestination 70 0 0 100%
nexusLIMS/exporters/destinations/elabftw.py (no class) 33 0 6 100%
nexusLIMS/exporters/destinations/labarchives.py LabArchivesDestination 88 0 14 100%
nexusLIMS/exporters/destinations/labarchives.py (no class) 34 0 0 100%
nexusLIMS/exporters/registry.py ExporterRegistry 40 0 1 100%
nexusLIMS/exporters/registry.py (no class) 22 0 2 100%
nexusLIMS/exporters/strategies.py (no class) 54 0 6 100%
nexusLIMS/extractors/__init__.py parse_metadata.ExtractorMethod 2 0 1 100%
nexusLIMS/extractors/__init__.py _CustomEncoder 0 0 19 100%
nexusLIMS/extractors/__init__.py (no class) 186 0 13 100%
nexusLIMS/extractors/base.py FieldDefinition 0 0 0 100%
nexusLIMS/extractors/base.py ExtractionContext 0 0 0 100%
nexusLIMS/extractors/base.py BaseExtractor 0 0 4 100%
nexusLIMS/extractors/base.py PreviewGenerator 0 0 3 100%
nexusLIMS/extractors/base.py InstrumentProfile 0 0 0 100%
nexusLIMS/extractors/base.py (no class) 37 0 6 100%
nexusLIMS/extractors/plugins/__init__.py (no class) 1 0 1 100%
nexusLIMS/extractors/plugins/basic_metadata.py BasicFileInfoExtractor 10 0 0 100%
nexusLIMS/extractors/plugins/basic_metadata.py (no class) 17 0 0 100%
nexusLIMS/extractors/plugins/digital_micrograph.py DM3Extractor 13 0 0 100%
nexusLIMS/extractors/plugins/digital_micrograph.py (no class) 343 0 6 100%
nexusLIMS/extractors/plugins/edax.py SpcExtractor 38 0 0 100%
nexusLIMS/extractors/plugins/edax.py MsaExtractor 36 0 0 100%
nexusLIMS/extractors/plugins/edax.py (no class) 32 0 0 100%
nexusLIMS/extractors/plugins/fei_emi.py SerEmiExtractor 97 0 0 100%
nexusLIMS/extractors/plugins/fei_emi.py (no class) 179 0 0 100%
nexusLIMS/extractors/plugins/orion_HIM_tif.py OrionTiffExtractor 168 0 0 100%
nexusLIMS/extractors/plugins/orion_HIM_tif.py (no class) 30 0 0 100%
nexusLIMS/extractors/plugins/preview_generators/__init__.py (no class) 5 0 0 100%
nexusLIMS/extractors/plugins/preview_generators/hyperspy_preview.py HyperSpyPreviewGenerator 15 0 0 100%
nexusLIMS/extractors/plugins/preview_generators/hyperspy_preview.py (no class) 344 0 2 100%
nexusLIMS/extractors/plugins/preview_generators/image_preview.py ImagePreviewGenerator 8 0 0 100%
nexusLIMS/extractors/plugins/preview_generators/image_preview.py (no class) 54 0 0 100%
nexusLIMS/extractors/plugins/preview_generators/text_preview.py TextPreviewGenerator 9 0 0 100%
nexusLIMS/extractors/plugins/preview_generators/text_preview.py (no class) 77 0 0 100%
nexusLIMS/extractors/plugins/preview_generators/tofwerk_pfib_preview.py TofwerkPfibPreviewGenerator 15 0 0 100%
nexusLIMS/extractors/plugins/preview_generators/tofwerk_pfib_preview.py (no class) 254 0 5 100%
nexusLIMS/extractors/plugins/profiles/__init__.py (no class) 49 0 2 100%
nexusLIMS/extractors/plugins/profiles/fei_titan_stem_643.py (no class) 26 0 2 100%
nexusLIMS/extractors/plugins/profiles/fei_titan_tem_642.py (no class) 54 0 2 100%
nexusLIMS/extractors/plugins/profiles/jeol_jem_642.py (no class) 23 0 2 100%
nexusLIMS/extractors/plugins/quanta_tif.py QuantaTiffExtractor 294 0 2 100%
nexusLIMS/extractors/plugins/quanta_tif.py (no class) 58 0 0 100%
nexusLIMS/extractors/plugins/tescan_tif.py TescanTiffExtractor 209 0 2 100%
nexusLIMS/extractors/plugins/tescan_tif.py (no class) 38 0 0 100%
nexusLIMS/extractors/plugins/tofwerk_pfib.py TofwerkPfibExtractor 24 0 0 100%
nexusLIMS/extractors/plugins/tofwerk_pfib.py (no class) 99 0 2 100%
nexusLIMS/extractors/profiles.py InstrumentProfileRegistry 13 0 2 100%
nexusLIMS/extractors/profiles.py (no class) 16 0 4 100%
nexusLIMS/extractors/registry.py ExtractorRegistry 201 0 8 100%
nexusLIMS/extractors/registry.py (no class) 41 0 3 100%
nexusLIMS/extractors/utils.py (no class) 195 0 1 100%
nexusLIMS/extractors/xml_serialization.py (no class) 49 0 1 100%
nexusLIMS/harvesters/__init__.py (no class) 11 0 5 100%
nexusLIMS/harvesters/nemo/__init__.py (no class) 66 0 0 100%
nexusLIMS/harvesters/nemo/connector.py NemoConnector 235 0 8 100%
nexusLIMS/harvesters/nemo/connector.py (no class) 37 0 0 100%
nexusLIMS/harvesters/nemo/exceptions.py NoDataConsentError 0 0 0 100%
nexusLIMS/harvesters/nemo/exceptions.py NoMatchingReservationError 0 0 0 100%
nexusLIMS/harvesters/nemo/exceptions.py (no class) 2 0 0 100%
nexusLIMS/harvesters/nemo/utils.py (no class) 77 0 5 100%
nexusLIMS/harvesters/reservation_event.py ReservationEvent 94 0 2 100%
nexusLIMS/harvesters/reservation_event.py (no class) 36 0 0 100%
nexusLIMS/instruments.py (no class) 50 0 0 100%
nexusLIMS/schemas/__init__.py (no class) 5 0 0 100%
nexusLIMS/schemas/activity.py AcquisitionActivity 110 0 2 100%
nexusLIMS/schemas/activity.py (no class) 113 0 3 100%
nexusLIMS/schemas/em_glossary.py (no class) 116 0 0 100%
nexusLIMS/schemas/metadata.py ExtractionDetails 0 0 0 100%
nexusLIMS/schemas/metadata.py StagePosition 0 0 0 100%
nexusLIMS/schemas/metadata.py NexusMetadata 13 0 1 100%
nexusLIMS/schemas/metadata.py ImageMetadata 0 0 0 100%
nexusLIMS/schemas/metadata.py SpectrumMetadata 0 0 0 100%
nexusLIMS/schemas/metadata.py SpectrumImageMetadata 1 0 0 100%
nexusLIMS/schemas/metadata.py DiffractionMetadata 0 0 0 100%
nexusLIMS/schemas/metadata.py (no class) 130 0 13 100%
nexusLIMS/schemas/pint_types.py _PintQuantityPydanticAnnotation 26 0 2 100%
nexusLIMS/schemas/pint_types.py (no class) 14 0 2 100%
nexusLIMS/schemas/units.py (no class) 102 0 0 100%
nexusLIMS/tui/__init__.py (no class) 2 0 0 100%
nexusLIMS/tui/apps/__init__.py (no class) 0 0 0 100%
nexusLIMS/tui/apps/config/__init__.py (no class) 2 0 0 100%
nexusLIMS/tui/apps/config/app.py ConfiguratorApp 11 0 0 100%
nexusLIMS/tui/apps/config/app.py (no class) 13 0 0 100%
nexusLIMS/tui/apps/config/screens.py FieldDetailScreen 11 0 0 100%
nexusLIMS/tui/apps/config/screens.py LabArchivesGetUidDialog 38 0 0 100%
nexusLIMS/tui/apps/config/screens.py ConfigScreen 456 0 0 100%
nexusLIMS/tui/apps/config/screens.py (no class) 177 0 1 100%
nexusLIMS/tui/apps/config/validators.py (no class) 61 0 0 100%
nexusLIMS/tui/apps/db_browser.py NexusLIMSTableViewerPane 64 0 0 100%
nexusLIMS/tui/apps/db_browser.py NexusLIMSDBApp 8 0 0 100%
nexusLIMS/tui/apps/db_browser.py (no class) 29 0 2 100%
nexusLIMS/tui/apps/instruments/__init__.py (no class) 2 0 0 100%
nexusLIMS/tui/apps/instruments/app.py InstrumentManagerApp 17 0 0 100%
nexusLIMS/tui/apps/instruments/app.py (no class) 12 0 0 100%
nexusLIMS/tui/apps/instruments/screens.py WelcomeDialog 9 0 0 100%
nexusLIMS/tui/apps/instruments/screens.py InstrumentListScreen 51 0 0 100%
nexusLIMS/tui/apps/instruments/screens.py InstrumentAddScreen 42 0 0 100%
nexusLIMS/tui/apps/instruments/screens.py InstrumentEditScreen 44 0 0 100%
nexusLIMS/tui/apps/instruments/screens.py (no class) 43 0 0 100%
nexusLIMS/tui/apps/instruments/validators.py (no class) 35 0 0 100%
nexusLIMS/tui/common/__init__.py (no class) 4 0 0 100%
nexusLIMS/tui/common/base_app.py HelpScreen 21 0 0 100%
nexusLIMS/tui/common/base_app.py BaseNexusApp 26 0 0 100%
nexusLIMS/tui/common/base_app.py (no class) 27 0 0 100%
nexusLIMS/tui/common/base_screens.py BaseListScreen 74 0 1 100%
nexusLIMS/tui/common/base_screens.py BaseFormScreen 28 0 0 100%
nexusLIMS/tui/common/base_screens.py ConfirmDialog 11 0 0 100%
nexusLIMS/tui/common/base_screens.py (no class) 62 0 0 100%
nexusLIMS/tui/common/db_utils.py (no class) 25 0 3 100%
nexusLIMS/tui/common/validators.py (no class) 72 0 0 100%
nexusLIMS/tui/common/widgets.py NumpadInput 5 0 0 100%
nexusLIMS/tui/common/widgets.py ValidatedInput 17 0 0 100%
nexusLIMS/tui/common/widgets.py AutocompleteInput 7 0 0 100%
nexusLIMS/tui/common/widgets.py _ListSuggester 9 0 0 100%
nexusLIMS/tui/common/widgets.py FormField 29 0 0 100%
nexusLIMS/tui/common/widgets.py FormField.Changed 3 0 0 100%
nexusLIMS/tui/common/widgets.py (no class) 39 0 0 100%
nexusLIMS/utils/__init__.py (no class) 0 0 0 100%
nexusLIMS/utils/cdcs.py AuthenticationError 1 0 0 100%
nexusLIMS/utils/cdcs.py CDCSDataRecord 0 0 0 100%
nexusLIMS/utils/cdcs.py (no class) 113 0 0 100%
nexusLIMS/utils/dicts.py (no class) 27 0 1 100%
nexusLIMS/utils/elabftw.py ELabFTWError 0 0 0 100%
nexusLIMS/utils/elabftw.py ELabFTWAuthenticationError 0 0 0 100%
nexusLIMS/utils/elabftw.py ELabFTWNotFoundError 0 0 0 100%
nexusLIMS/utils/elabftw.py ContentType 0 0 0 100%
nexusLIMS/utils/elabftw.py State 0 0 0 100%
nexusLIMS/utils/elabftw.py ELabFTWClient 132 0 3 100%
nexusLIMS/utils/elabftw.py (no class) 39 0 2 100%
nexusLIMS/utils/files.py (no class) 107 0 66 100%
nexusLIMS/utils/labarchives.py LabArchivesError 0 0 0 100%
nexusLIMS/utils/labarchives.py LabArchivesAuthenticationError 0 0 0 100%
nexusLIMS/utils/labarchives.py LabArchivesPermissionError 0 0 0 100%
nexusLIMS/utils/labarchives.py LabArchivesNotFoundError 0 0 0 100%
nexusLIMS/utils/labarchives.py LabArchivesRateLimitError 0 0 0 100%
nexusLIMS/utils/labarchives.py LabArchivesClient 128 0 266 100%
nexusLIMS/utils/labarchives.py (no class) 52 0 28 100%
nexusLIMS/utils/logging.py (no class) 6 0 0 100%
nexusLIMS/utils/network.py (no class) 45 0 1 100%
nexusLIMS/utils/paths.py (no class) 18 0 1 100%
nexusLIMS/utils/time.py (no class) 21 0 0 100%
nexusLIMS/version.py (no class) 3 0 0 100%
Total   9304 0 628 100%

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